If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ), 'gf_id' => 'HOM05D000783', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000783' ), 'data_identifier' => 'HOM05D000783', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000783', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '753', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p10280' => 'bna', 'A05p16230' => 'bna', 'A06p38530' => 'bna', 'A07p29820' => 'bna', 'A07p39340' => 'bna', 'A09p01730' => 'bna', 'A10p19240' => 'bna', 'Aa31LG11G8240' => 'aar', 'Aa31LG1G13920' => 'aar', 'Aa31LG4G13010' => 'aar', 'Aa31LG4G3640' => 'aar', 'Aa31LG5G1940' => 'aar', 'Aa31LG9G17660' => 'aar', 'Aa31sc866G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3767' => 'aag', 'Actinidia07051' => 'ach', 'Actinidia15644' => 'ach', 'Actinidia17159' => 'ach', 'Actinidia17530' => 'ach', 'Actinidia21031' => 'ach', 'Actinidia21032' => 'ach', 'Actinidia25814' => 'ach', 'Actinidia25815' => 'ach', 'Actinidia30255' => 'ach', 'Actinidia35622' => 'ach', 'Actinidia37220' => 'ach', 'Actinidia39619' => 'ach', 'Actinidia40411' => 'ach', 'Ah.06g191560' => 'amhyb', 'Ah.08g219790' => 'amhyb', 'Ah.09g229010' => 'amhyb', 'Ah.15g093070' => 'amhyb', 'AL2G33150' => 'aly', 'AL5G21270' => 'aly', 'AL6G32340' => 'aly', 'AL6G50850' => 'aly', 'AL7G45720' => 'aly', 'AL8G22730' => 'aly', 'Aqoxy2G02891' => 'aox', 'Aqoxy3G04162' => 'aox', 'Aqoxy7G04151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.18JCSN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Q9906' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4VZ14Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53FINS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2NYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A2UKNP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DW5X6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9F7ZA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJKP1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWM0H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC98AP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LN7U65' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SMR3WG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS6393' => 'arhy', 'AT1G73370' => 'ath', 'AT3G43190' => 'ath', 'AT4G02280' => 'ath', 'AT5G20830' => 'ath', 'AT5G37180' => 'ath', 'AT5G49190' => 'ath', 'ATR0317G021' => 'atr', 'ATR0807G093' => 'atr', 'Atru.chr4.2906' => 'acertr', 'Atru.chr5.1104' => 'acertr', 'Atru.chr7.1764' => 'acertr', 'Atru.chr7.1765' => 'acertr', 'Atru.chr7.1996' => 'acertr', 'Atru.chr9.1585' => 'acertr', 'AUR62001762' => 'cqu', 'AUR62004763' => 'cqu', 'AUR62008699' => 'cqu', 'AUR62009549' => 'cqu', 'AUR62025310' => 'cqu', 'AUR62025532' => 'cqu', 'AUR62028315' => 'cqu', 'AUR62037490' => 'cqu', 'BcaB01g02060' => 'bca', 'BcaB01g04767' => 'bca', 'BcaB01g05186' => 'bca', 'BcaB02g08033' => 'bca', 'BcaB03g15055' => 'bca', 'BcaB03g15709' => 'bca', 'BcaB03g15710' => 'bca', 'BcaB03g15711' => 'bca', 'BcaB03g15712' => 'bca', 'BcaB06g26152' => 'bca', 'BcaB08g36532' => 'bca', 'BcaC04g19471' => 'bca', 'BcaC04g24052' => 'bca', 'BcaC06g30710' => 'bca', 'BcaC08g44340' => 'bca', 'BcaC08g45643' => 'bca', 'BcaC08g45644' => 'bca', 'BcaC08g45645' => 'bca', 'BcaC08g45646' => 'bca', 'BcaC08g46761' => 'bca', 'BcaNung02586' => 'bca', 'BcaNung04939' => 'bca', 'BolC3t13651H' => 'bol', 'BolC6t36971H' => 'bol', 'BolC6t38519H' => 'bol', 'BolC6t39795H' => 'bol', 'BolC7t44498H' => 'bol', 'BolC9t53115H' => 'bol', 'BolC9t58398H' => 'bol', 'BraA03t10339Z' => 'bra', 'BraA05t20534Z' => 'bra', 'BraA06t26767Z' => 'bra', 'BraA07t30620Z' => 'bra', 'BraA07t31483Z' => 'bra', 'BraA09t35828Z' => 'bra', 'BraA10t44001Z' => 'bra', 'C02p46280' => 'bna', 'C03p11800' => 'bna', 'C06p17770' => 'bna', 'C06p34030' => 'bna', 'C06p47570' => 'bna', 'C07p39740' => 'bna', 'C09p01800' => 'bna', 'C09p55360' => 'bna', 'CAN.G1681.14' => 'can', 'CAN.G33.21' => 'can', 'CAN.G472.28' => 'can', 'CAN.G637.5' => 'can', 'CAN.G816.19' => 'can', 'CANSAT01G1578' => 'cansat', 'CANSAT56G0707' => 'cansat', 'CANSAT78G0819' => 'cansat', 'CANSAT78G1803' => 'cansat', 'CARHR066420' => 'chi', 'CARHR152590' => 'chi', 'CARHR152600' => 'chi', 'CARHR152610' => 'chi', 'CARHR182470' => 'chi', 'CARHR192020' => 'chi', 'CARHR215870' => 'chi', 'CARHR215880' => 'chi', 'CARHR250490' => 'chi', 'Carub.0002s2011' => 'cru', 'Carub.0005s0900' => 'cru', 'Carub.0006s1912' => 'cru', 'Carub.0006s3489' => 'cru', 'Carub.0007s3237' => 'cru', 'Carub.0008s0901' => 'cru', 'Ca_02279_v3' => 'car', 'Ca_02317_v3' => 'car', 'Ca_02318_v3' => 'car', 'Ca_05757_v3' => 'car', 'Ca_09189_v3' => 'car', 'Ca_10322_v3' => 'car', 'Ca_17072_v3' => 'car', 'Ca_21338_v3' => 'car', 'Ca_26717_v3' => 'car', 'Ca_30969_v3' => 'car', 'CBR_g17118' => 'cbr', 'CBR_g17120' => 'cbr', 'CBR_g17123' => 'cbr', 'CBR_g17593' => 'cbr', 'CBR_g23321' => 'cbr', 'CBR_g41456' => 'cbr', 'CBR_g41457' => 'cbr', 'CBR_g41715' => 'cbr', 'CBR_g4838' => 'cbr', 'CBR_g49517' => 'cbr', 'CBR_g49519' => 'cbr', 'CBR_g49535' => 'cbr', 'CBR_g49537' => 'cbr', 'CBR_g55866' => 'cbr', 'CBR_g55869' => 'cbr', 'CBR_g55871' => 'cbr', 'CBR_g6291' => 'cbr', 'Cc01_g05910' => 'ccan', 'Cc01_g21050' => 'ccan', 'Cc04_g00860' => 'ccan', 'Cc04_g08870' => 'ccan', 'Cc06_g12680' => 'ccan', 'Cc07_g12730' => 'ccan', 'Cc09_g06570' => 'ccan', 'CDE01G0072' => 'cde', 'CDE04G1561' => 'cde', 'CDE04G2693' => 'cde', 'CDE05G2200' => 'cde', 'CDE06G1030' => 'cde', 'CDE06G1505' => 'cde', 'CDE07G0278' => 'cde', 'CDE11G0938' => 'cde', 'CDE12G0082' => 'cde', 'Cfa005883' => 'cfa', 'Cfa007748' => 'cfa', 'Cfa020690' => 'cfa', 'Ciclev10004341m.g' => 'ccl', 'Ciclev10007483m.g' => 'ccl', 'Ciclev10010343m.g' => 'ccl', 'Ciclev10011062m.g' => 'ccl', 'Ciclev10018889m.g' => 'ccl', 'Ciclev10024638m.g' => 'ccl', 'CiPaw.03G076000' => 'cil', 'CiPaw.03G200600' => 'cil', 'CiPaw.04G049500' => 'cil', 'CiPaw.04G140100' => 'cil', 'CiPaw.07G111400' => 'cil', 'CiPaw.15G151400' => 'cil', 'CiPaw.16G101200' => 'cil', 'ClCG01G008480' => 'cla', 'ClCG03G014760' => 'cla', 'ClCG04G012530' => 'cla', 'ClCG10G011100' => 'cla', 'COL.COLO4_20033' => 'col', 'COL.COLO4_21210' => 'col', 'COL.COLO4_21214' => 'col', 'COL.COLO4_23315' => 'col', 'Cpa.g.c29609' => 'cpa', 'Cpa.g.c46932' => 'cpa', 'Cpa.g.sc151.21' => 'cpa', 'Cpa.g.sc178.35' => 'cpa', 'Cpa.g.sc50.160' => 'cpa', 'Cpa.g.sc82.65' => 'cpa', 'CsaV3_1G005170' => 'csa', 'CsaV3_1G041400' => 'csa', 'CsaV3_4G000970' => 'csa', 'CsaV3_5G020420' => 'csa', 'CSS0007848' => 'camsi', 'CSS0018622' => 'camsi', 'CSS0022634' => 'camsi', 'CSS0025785' => 'camsi', 'CSS0026770' => 'camsi', 'CSS0050005' => 'camsi', 'DCAR_002483' => 'dca', 'DCAR_002856' => 'dca', 'DCAR_002857' => 'dca', 'DCAR_010214' => 'dca', 'DCAR_014142' => 'dca', 'DCAR_024776' => 'dca', 'DCAR_024777' => 'dca', 'DCAR_028527' => 'dca', 'DCAR_031432' => 'dca', 'Dinv08247' => 'din', 'Dinv13016' => 'din', 'Dinv19082' => 'din', 'Dinv19672' => 'din', 'Dinv25509' => 'din', 'Dinv29723' => 'din', 'Dinv33071' => 'din', 'Dinv42432' => 'din', 'Dinv44349' => 'din', 'Duzib133G0513' => 'dzi', 'Duzib133G0620' => 'dzi', 'Duzib150G1453' => 'dzi', 'Duzib168G0335' => 'dzi', 'Duzib168G1871' => 'dzi', 'Duzib187G0902' => 'dzi', 'Duzib205G1456' => 'dzi', 'ECA233G3128' => 'eca', 'ECA233G5831' => 'eca', 'ECA236G1669' => 'eca', 'ECA236G1705' => 'eca', 'ECA236G3150' => 'eca', 'ECA238G2808' => 'eca', 'ECA248G0502' => 'eca', 'ECA248G0937' => 'eca', 'EL10Ac2g02777' => 'bvu', 'EL10Ac2g03419' => 'bvu', 'EL10Ac2g03421' => 'bvu', 'EL10Ac3g06314' => 'bvu', 'EL10Ac4g08356' => 'bvu', 'EL10Ac4g08786' => 'bvu', 'EL10Ac4g08918' => 'bvu', 'EL10Ac7g16042' => 'bvu', 'EL10Ac7g17555' => 'bvu', 'EL10Ac8g18976' => 'bvu', 'EL10Ac8g19621' => 'bvu', 'EL10Ac9g20823' => 'bvu', 'EL10Ac9g22495' => 'bvu', 'Eucgr.B01577' => 'egr', 'Eucgr.C00769' => 'egr', 'Eucgr.C03199' => 'egr', 'Eucgr.C03201' => 'egr', 'Eucgr.C03204' => 'egr', 'Eucgr.C03205' => 'egr', 'Eucgr.C03207' => 'egr', 'Eucgr.F01010' => 'egr', 'Eucgr.H01094' => 'egr', 'Eucgr.H03496' => 'egr', 'Eucgr.H03515' => 'egr', 'Eucgr.J01640' => 'egr', 'Eucgr.K00816' => 'egr', 'Eucgr.K02305' => 'egr', 'Eucgr.K03505' => 'egr', 'FAN04G2072' => 'fan', 'FAN04G2474' => 'fan', 'FAN08G1084' => 'fan', 'FAN10G0001' => 'fan', 'FAN12G3501' => 'fan', 'FAN12G3970' => 'fan', 'FAN13G0909' => 'fan', 'FAN13G1963' => 'fan', 'FAN15G0304' => 'fan', 'FAN16G1857' => 'fan', 'FAN17G2639' => 'fan', 'FAN18G1382' => 'fan', 'FAN19G0440' => 'fan', 'FAN19G0718' => 'fan', 'FAN19G2734' => 'fan', 'FAN20G2672' => 'fan', 'FAN23G0827' => 'fan', 'FAN23G2166' => 'fan', 'FAN23G2286' => 'fan', 'FAN24G3251' => 'fan', 'FAN26G0365' => 'fan', 'FAN26G1058' => 'fan', 'FAN26G1524' => 'fan', 'FAN26G2492' => 'fan', 'FAN26G3167' => 'fan', 'FAN27G2372' => 'fan', 'FAN28G0658' => 'fan', 'FAN28G0712' => 'fan', 'FAN28G1668' => 'fan', 'FAN28G1690' => 'fan', 'FvH4_1g07260' => 'fve', 'FvH4_1g09360' => 'fve', 'FvH4_1g27400' => 'fve', 'FvH4_2g26000' => 'fve', 'FvH4_4g18710' => 'fve', 'FvH4_5g18160' => 'fve', 'Glyma.02G240400' => 'gma', 'Glyma.03G216300' => 'gma', 'Glyma.07G152567' => 'gma', 'Glyma.09G073600' => 'gma', 'Glyma.09G167000' => 'gma', 'Glyma.11G212700' => 'gma', 'Glyma.13G114000' => 'gma', 'Glyma.14G209900' => 'gma', 'Glyma.15G151000' => 'gma', 'Glyma.15G182600' => 'gma', 'Glyma.16G217200' => 'gma', 'Glyma.17G045800' => 'gma', 'Glyma.18G043733' => 'gma', 'Glyma.18G043766' => 'gma', 'Glyma.19G212800' => 'gma', 'Gohir.A05G036000' => 'ghi', 'Gohir.A06G079600' => 'ghi', 'Gohir.A07G017100' => 'ghi', 'Gohir.A07G074200' => 'ghi', 'Gohir.A08G118000' => 'ghi', 'Gohir.A11G040500' => 'ghi', 'Gohir.A13G189200' => 'ghi', 'Gohir.D05G037500' => 'ghi', 'Gohir.D06G078800' => 'ghi', 'Gohir.D06G079200' => 'ghi', 'Gohir.D07G016900' => 'ghi', 'Gohir.D07G078900' => 'ghi', 'Gohir.D08G139000' => 'ghi', 'Gohir.D11G043700' => 'ghi', 'Gohir.D13G196200' => 'ghi', 'Gorai.001G017700' => 'gra', 'Gorai.001G083400' => 'gra', 'Gorai.004G142700' => 'gra', 'Gorai.007G047100' => 'gra', 'Gorai.009G038000' => 'gra', 'Gorai.010G091800' => 'gra', 'Gorai.010G092300' => 'gra', 'Gorai.013G222400' => 'gra', 'GSVIVG01015018001' => 'vvi', 'GSVIVG01028043001' => 'vvi', 'GSVIVG01029388001' => 'vvi', 'GSVIVG01035106001' => 'vvi', 'GSVIVG01035210001' => 'vvi', 'HanXRQChr01g0001131' => 'han', 'HanXRQChr04g0114781' => 'han', 'HanXRQChr07g0193851' => 'han', 'HanXRQChr10g0319811' => 'han', 'HanXRQChr12g0354261' => 'han', 'HanXRQChr12g0365681' => 'han', 'HanXRQChr14g0443371' => 'han', 'Haze_04970' => 'cav', 'Haze_14325' => 'cav', 'Haze_18993' => 'cav', 'Haze_26066' => 'cav', 'Hma1.2p1_0097F.1_g047960' => 'hma', 'Hma1.2p1_0152F.1_g067610' => 'hma', 'Hma1.2p1_0158F.1_g069600' => 'hma', 'Hma1.2p1_0179F.1_g079170' => 'hma', 'Hma1.2p1_0234F.1_g098490' => 'hma', 'Hma1.2p1_0494F.1_g165410' => 'hma', 'Hma1.2p1_0853F.1_g228770' => 'hma', 'Hma1.2p1_1514F.1_g288130' => 'hma', 'Hma1.2p1_1827F.1_g304445' => 'hma', 'HPP92_006916' => 'vpl', 'HPP92_011071' => 'vpl', 'HPP92_011364' => 'vpl', 'HPP92_011365' => 'vpl', 'HPP92_012829' => 'vpl', 'HPP92_016614' => 'vpl', 'HPP92_016615' => 'vpl', 'HPP92_025200' => 'vpl', 'Hund05444' => 'sun', 'Hund06867' => 'sun', 'Hund08882' => 'sun', 'Hund22212' => 'sun', 'Hund26107' => 'sun', 'Lalb_Chr01g0015571' => 'lal', 'Lalb_Chr02g0146501' => 'lal', 'Lalb_Chr07g0181391' => 'lal', 'Lalb_Chr08g0235761' => 'lal', 'Lalb_Chr08g0235771' => 'lal', 'Lalb_Chr11g0070351' => 'lal', 'Lalb_Chr11g0070361' => 'lal', 'Lalb_Chr11g0073991' => 'lal', 'Lalb_Chr12g0200341' => 'lal', 'Lalb_Chr13g0299201' => 'lal', 'Lalb_Chr14g0370351' => 'lal', 'Lalb_Chr17g0345861' => 'lal', 'Lalb_Chr18g0046891' => 'lal', 'Lj1A494T10' => 'lonja', 'Lj1A497T3' => 'lonja', 'Lj1g0005811' => 'lja', 'Lj2A1198T69' => 'lonja', 'Lj2g0024490' => 'lja', 'Lj3A824T70' => 'lonja', 'Lj3A825G34' => 'lonja', 'Lj3C824T17' => 'lonja', 'Lj4C251G3' => 'lonja', 'Lj4g0020066' => 'lja', 'Lj4g0020918' => 'lja', 'Lj5A166G72' => 'lonja', 'Lj5g0007082' => 'lja', 'Lj6g0005452' => 'lja', 'Lj6g0005661' => 'lja', 'Lj6g0024216' => 'lja', 'Lj7C692T11' => 'lonja', 'Lj9C350T11' => 'lonja', 'LjContig00141g0017756' => 'lja', 'Lsat_1_v5_gn_2_71841' => 'lsa', 'Lsat_1_v5_gn_5_119340' => 'lsa', 'Lsat_1_v5_gn_5_138880' => 'lsa', 'Lsat_1_v5_gn_5_138920' => 'lsa', 'Lsat_1_v5_gn_5_190260' => 'lsa', 'Lsat_1_v5_gn_6_14301' => 'lsa', 'Lsat_1_v5_gn_7_57640' => 'lsa', 'Lsat_1_v5_gn_8_163801' => 'lsa', 'Lsat_1_v5_gn_8_19680' => 'lsa', 'Manes.01G123800' => 'mes', 'Manes.01G221900' => 'mes', 'Manes.02G081500' => 'mes', 'Manes.03G044400' => 'mes', 'Manes.03G198900' => 'mes', 'Manes.14G107800' => 'mes', 'Manes.16G090600' => 'mes', 'Mapoly0122s0057' => 'mpo', 'MBI06_g19631_MAGBIO' => 'mbi', 'MBI08_g03392_MAGBIO' => 'mbi', 'MBI13_g01674_MAGBIO' => 'mbi', 'MBI14_g27759_MAGBIO' => 'mbi', 'MBI18_g46195_MAGBIO' => 'mbi', 'MBI19_g33493_MAGBIO' => 'mbi', 'MBI19_g36234_MAGBIO' => 'mbi', 'MBI19_g42927_MAGBIO' => 'mbi', 'MD02G1100500' => 'mdo', 'MD02G1100600' => 'mdo', 'MD03G1291300' => 'mdo', 'MD06G1237200' => 'mdo', 'MD09G1280200' => 'mdo', 'MD11G1307000' => 'mdo', 'MD13G1163900' => 'mdo', 'MD13G1164000' => 'mdo', 'MD13G1164100' => 'mdo', 'MD13G1164200' => 'mdo', 'MD14G1244000' => 'mdo', 'MD15G1223500' => 'mdo', 'MD16G1164000' => 'mdo', 'MD17G1286900' => 'mdo', 'MD17G1287000' => 'mdo', 'Medtr0277s0030' => 'mtr', 'Medtr0419s0010' => 'mtr', 'Medtr0419s0050' => 'mtr', 'Medtr1g088170' => 'mtr', 'Medtr2g044070' => 'mtr', 'Medtr3g064610' => 'mtr', 'Medtr4g021160' => 'mtr', 'Medtr4g124660' => 'mtr', 'Medtr4g133550' => 'mtr', 'Medtr5g076830' => 'mtr', 'Medtr6g478000' => 'mtr', 'Medtr6g478030' => 'mtr', 'Medtr7g025190' => 'mtr', 'Medtr7g025200' => 'mtr', 'Medtr7g077170' => 'mtr', 'Medtr7g106150' => 'mtr', 'Medtr7g108930' => 'mtr', 'MELO3C001956.2' => 'cme', 'MELO3C015552.2' => 'cme', 'MELO3C017942.2' => 'cme', 'MELO3C025101.2' => 'cme', 'Migut.D00135' => 'egut', 'Migut.D02053' => 'egut', 'Migut.J00882' => 'egut', 'Migut.K00749' => 'egut', 'MSTRG.18136' => 'ama', 'MSTRG.18309' => 'ama', 'MSTRG.21645' => 'ama', 'MSTRG.26498' => 'ama', 'MSTRG.3674' => 'ama', 'MSTRG.5981' => 'ama', 'Nitab4.5_0000073g0400' => 'nta', 'Nitab4.5_0000116g0360' => 'nta', 'Nitab4.5_0000170g0050' => 'nta', 'Nitab4.5_0000170g0060' => 'nta', 'Nitab4.5_0000483g0250' => 'nta', 'Nitab4.5_0001180g0180' => 'nta', 'Nitab4.5_0002280g0010' => 'nta', 'Nitab4.5_0002334g0030' => 'nta', 'Nitab4.5_0002334g0040' => 'nta', 'Nitab4.5_0005925g0020' => 'nta', 'Nitab4.5_0005973g0050' => 'nta', 'Nitab4.5_0007169g0010' => 'nta', 'Nitab4.5_0007641g0020' => 'nta', 'Nitab4.5_0008137g0030' => 'nta', 'Nn2g12585' => 'nnu', 'Nn2g14684' => 'nnu', 'Nn3g21545' => 'nnu', 'Nn4g22200' => 'nnu', 'Nn4g24757' => 'nnu', 'Nn4g24760' => 'nnu', 'Nn4g24763' => 'nnu', 'Nn4g25752' => 'nnu', 'Nn5g28489' => 'nnu', 'Nn5g28685' => 'nnu', 'Oeu000277.1' => 'oeu', 'Oeu007412.1' => 'oeu', 'Oeu008350.1' => 'oeu', 'Oeu012323.1' => 'oeu', 'Oeu028110.1' => 'oeu', 'Oeu032291.1' => 'oeu', 'Oeu045001.1' => 'oeu', 'Oeu048323.1' => 'oeu', 'Oeu048326.1' => 'oeu', 'Oeu055909.1' => 'oeu', 'Os02g0831500' => 'osa', 'Os03g0340500' => 'osa', 'Os03g0401300' => 'osa', 'Os04g0249500' => 'osa', 'Os04g0309600' => 'osa', 'Os06g0194900' => 'osa', 'Os07g0616800' => 'osa', 'Peaxi162Scf00001g00369' => 'pax', 'Peaxi162Scf00171g00045' => 'pax', 'Peaxi162Scf00474g00062' => 'pax', 'Peaxi162Scf00474g00612' => 'pax', 'Peaxi162Scf00713g00213' => 'pax', 'Peaxi162Scf00928g00232' => 'pax', 'PGR042G2881' => 'pgr', 'PGR044G0677' => 'pgr', 'PGR044G1691' => 'pgr', 'PGR126G0004' => 'pgr', 'PGR142G0713' => 'pgr', 'PGSC0003DMG400002895' => 'stu', 'PGSC0003DMG400006672' => 'stu', 'PGSC0003DMG400013546' => 'stu', 'PGSC0003DMG400013547' => 'stu', 'PGSC0003DMG400016730' => 'stu', 'PGSC0003DMG400031046' => 'stu', 'Phvul.001G209600' => 'pvu', 'Phvul.003G127500' => 'pvu', 'Phvul.004G142800' => 'pvu', 'Phvul.006G087300' => 'pvu', 'Phvul.008G241300' => 'pvu', 'Phvul.009G223800' => 'pvu', 'Phvul.009G250800' => 'pvu', 'Potri.002G202300' => 'ptr', 'Potri.004G081300' => 'ptr', 'Potri.006G136700' => 'ptr', 'Potri.012G037200' => 'ptr', 'Potri.015G029100' => 'ptr', 'Potri.017G139100' => 'ptr', 'Potri.018G063500' => 'ptr', 'Pp3c10_11330' => 'ppa', 'Pp3c14_7690' => 'ppa', 'Pp3c19_5850' => 'ppa', 'Pp3c1_33460' => 'ppa', 'Pp3c5_19770' => 'ppa', 'Prupe.1G131700' => 'ppe', 'Prupe.2G242300' => 'ppe', 'Prupe.3G014100' => 'ppe', 'Prupe.5G241700' => 'ppe', 'Prupe.7G192300' => 'ppe', 'Prupe.8G264300' => 'ppe', 'Psat0s4343g0040' => 'psa', 'Psat1g122960' => 'psa', 'Psat1g139760' => 'psa', 'Psat3g021440' => 'psa', 'Psat4g019440' => 'psa', 'Psat5g142400' => 'psa', 'Psat6g162600' => 'psa', 'PSO063G6943' => 'pso', 'PSO135G0981' => 'pso', 'PSO170G4010' => 'pso', 'PSO407G0419' => 'pso', 'PSO724G0181' => 'pso', 'PSO782G0060' => 'pso', 'PSO832G0771' => 'pso', 'QL02p064211' => 'qlo', 'QL06p010412' => 'qlo', 'QL10p017785' => 'qlo', 'QL10p032503' => 'qlo', 'QL11p002874' => 'qlo', 'QL11p002905' => 'qlo', 'QL11p002923' => 'qlo', 'QL12p027948' => 'qlo', 'RcHm_v2.0_Chr2g0093161' => 'rch', 'RcHm_v2.0_Chr2g0095901' => 'rch', 'RcHm_v2.0_Chr3g0465391' => 'rch', 'RcHm_v2.0_Chr3g0488651' => 'rch', 'RcHm_v2.0_Chr4g0423411' => 'rch', 'RcHm_v2.0_Chr6g0294361' => 'rch', 'RcHm_v2.0_Chr7g0177421' => 'rch', 'Rhsim01G0287000' => 'rsi', 'Rhsim05G0002300' => 'rsi', 'Rhsim10G0185600' => 'rsi', 'Sabra02G0156800' => 'sbr', 'Sabra04G0054000' => 'sbr', 'Sabra06G0106900' => 'sbr', 'Sabra17G0113700' => 'sbr', 'Sabra17G0117300' => 'sbr', 'Sabra18G0056500' => 'sbr', 'SalBow5G0039' => 'sbo', 'SalBow5G3033' => 'sbo', 'SalBow5G5407' => 'sbo', 'SalBow5G5478' => 'sbo', 'SalBow6G5102' => 'sbo', 'Sc05g0003650' => 'sci', 'Sc08g0009160' => 'sci', 'Sc13g0003200' => 'sci', 'Sc20g0000820' => 'sci', 'Sed0003340' => 'sed', 'Sed0005040' => 'sed', 'Sed0013387' => 'sed', 'Sed0015130' => 'sed', 'Sed0019952' => 'sed', 'SEGI_02390' => 'sgi', 'SEGI_14268' => 'sgi', 'SGA_v2.0_scaffold1G00349' => 'sas', 'SGA_v2.0_scaffold21G09554' => 'sas', 'SGA_v2.0_scaffold221G42687' => 'sas', 'SGA_v2.0_scaffold31G12694' => 'sas', 'SGA_v2.0_scaffold420G51389' => 'sas', 'SGA_v2.0_scaffold45G17108' => 'sas', 'SHI30100' => 'shi', 'SMO203G0230' => 'smo', 'Solyc02g081300.3' => 'sly', 'Solyc03g098290.4' => 'sly', 'Solyc07g042520.4' => 'sly', 'Solyc07g042550.3' => 'sly', 'Solyc09g098590.4' => 'sly', 'Solyc12g009300.3' => 'sly', 'Solyc12g040700.1' => 'sly', 'Sopen02g025930' => 'spe', 'Sopen03g029000' => 'spe', 'Sopen07g022190' => 'spe', 'Sopen07g022240' => 'spe', 'Sopen09g036500' => 'spe', 'Sopen12g004280' => 'spe', 'Sopen12g020280' => 'spe', 'Sopen12g020290' => 'spe', 'Sp2g19540' => 'spa', 'Sp5g18650' => 'spa', 'Sp5g28300' => 'spa', 'Sp6g02170' => 'spa', 'Sp6g23700' => 'spa', 'Sp7g05280' => 'spa', 'TAR365G1052' => 'tar', 'TAR371G1217' => 'tar', 'TAR374G0293' => 'tar', 'TAR374G0508' => 'tar', 'TAR629G0198' => 'tar', 'TAR636G1489' => 'tar', 'THA.LOC104799606' => 'tha', 'THA.LOC104805659' => 'tha', 'THA.LOC104810983' => 'tha', 'THA.LOC104812185' => 'tha', 'THA.LOC104825963' => 'tha', 'THA.LOC104827331' => 'tha', 'THA.LOC104827367' => 'tha', 'Thecc.01G304100' => 'tca', 'Thecc.03G071000' => 'tca', 'Thecc.04G058400' => 'tca', 'Thecc.04G289200' => 'tca', 'Thecc.09G070500' => 'tca', 'Thecc.09G070900' => 'tca', 'Thhalv10003667m.g' => 'esa', 'Thhalv10012719m.g' => 'esa', 'Thhalv10018094m.g' => 'esa', 'Thhalv10027639m.g' => 'esa', 'Thhalv10028435m.g' => 'esa', 'TPR.G11217' => 'tpr', 'TPR.G12596' => 'tpr', 'TPR.G20594' => 'tpr', 'TPR.G24066' => 'tpr', 'TPR.G26699' => 'tpr', 'TPR.G31745' => 'tpr', 'TPR.G33962' => 'tpr', 'TPR.G5300' => 'tpr', 'TPR.G5358' => 'tpr', 'TPR.G9617' => 'tpr', 'TWI23G0532' => 'twi', 'TWI34G1503' => 'twi', 'TWI53G1695' => 'twi', 'TWI59G0346' => 'twi', 'TWI63G0766' => 'twi', 'TWI81G0659' => 'twi', 'unitig_0.g1170' => 'ugi', 'unitig_26.g9117' => 'ugi', 'unitig_27.g24779' => 'ugi', 'unitig_699.g19395' => 'ugi', 'unitig_748.g7252' => 'ugi', 'unitig_749.g14185' => 'ugi', 'unitig_749.g14186' => 'ugi', 'vmacro03105' => 'vma', 'vmacro11224' => 'vma', 'vmacro15143' => 'vma', 'vmacro15144' => 'vma', 'vmacro17080' => 'vma', 'vmacro20463' => 'vma', 'VMungo0464G1599' => 'vmu', 'VMungo0540G0589' => 'vmu', 'VMungo0647G0118' => 'vmu', 'VMungo1215G0122' => 'vmu', 'VMungo1215G0791' => 'vmu', 'VMungo1309G2861' => 'vmu', 'VMungo1309G2992' => 'vmu', 'VMungo1383G2859' => 'vmu', 'Zm00001eb001100' => 'zma', 'Zm00001eb011410' => 'zma', 'Zm00001eb016250' => 'zma', 'Zm00001eb016290' => 'zma', 'Zm00001eb073460' => 'zma', 'Zm00001eb073850' => 'zma', 'Zm00001eb073860' => 'zma', 'Zm00001eb075720' => 'zma', 'Zm00001eb177680' => 'zma', 'Zm00001eb190590' => 'zma', 'Zm00001eb206640' => 'zma', 'Zm00001eb222530' => 'zma', 'Zm00001eb228780' => 'zma', 'Zm00001eb262920' => 'zma', 'Zm00001eb273080' => 'zma', 'Zm00001eb313170' => 'zma', 'Zm00001eb341190' => 'zma', 'Zm00001eb353620' => 'zma', 'Zm00001eb371600' => 'zma', 'Zm00001eb374090' => 'zma', 'Zm00001eb392880' => 'zma', 'Zm00001eb411180' => 'zma' ) $gf_id = 'HOM05D000783' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000783' ) $data_identifier = 'HOM05D000783' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 9, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 17, 'ccan' => (int) 7, 'cde' => (int) 9, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 13, 'egr' => (int) 15, 'fan' => (int) 30, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 9, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 10, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 15, 'mtr' => (int) 17, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 10, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 8, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1